This issue is caused by Google attempting to push searches from international customers to other google portals instead of the worldwide portal.

To solve this issue, make sure you are on version 1.01 or higher, and then go into the application Settings screen and check the box that says "Force No Country Redirect", then save the settings.

Once this setting has been changed the software start each session with a special request that will plant a cookie on your computer that tells Google to stop pushing your requests over to a different Google site.

Once you have changed this setting, you should get link numbers and page rank as normal.